Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America
Identifieur interne : 000033 ( Main/Exploration ); précédent : 000032; suivant : 000034Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America
Auteurs : Bradd J. Haley [États-Unis] ; Seon Woo Kim [États-Unis] ; James Pettengill [États-Unis] ; Yan Luo [États-Unis] ; Jeffrey S. Karns [États-Unis] ; Jo Ann S. Van Kessel [États-Unis]Source :
- PLoS ONE [ 1932-6203 ] ; 2016.
Abstract
Url:
DOI: 10.1371/journal.pone.0161225
PubMed: 27695032
PubMed Central: 5047448
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genomic and Evolutionary Analysis of Two <italic>Salmonella enterica</italic> Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America</title><author><name sortKey="Haley, Bradd J" sort="Haley, Bradd J" uniqKey="Haley B" first="Bradd J." last="Haley">Bradd J. Haley</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Environmental Microbial and Food Safety Laboratory, Beltsville Area Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Environmental Microbial and Food Safety Laboratory, Beltsville Area Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation></author><author><name sortKey="Kim, Seon Woo" sort="Kim, Seon Woo" uniqKey="Kim S" first="Seon Woo" last="Kim">Seon Woo Kim</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Environmental Microbial and Food Safety Laboratory, Beltsville Area Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Environmental Microbial and Food Safety Laboratory, Beltsville Area Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation></author><author><name sortKey="Pettengill, James" sort="Pettengill, James" uniqKey="Pettengill J" first="James" last="Pettengill">James Pettengill</name><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Office of Analytics and Outreach, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, College Park, MD, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Office of Analytics and Outreach, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, College Park, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation></author><author><name sortKey="Luo, Yan" sort="Luo, Yan" uniqKey="Luo Y" first="Yan" last="Luo">Yan Luo</name><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Office of Analytics and Outreach, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, College Park, MD, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Office of Analytics and Outreach, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, College Park, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation></author><author><name sortKey="Karns, Jeffrey S" sort="Karns, Jeffrey S" uniqKey="Karns J" first="Jeffrey S." last="Karns">Jeffrey S. Karns</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Environmental Microbial and Food Safety Laboratory, Beltsville Area Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Environmental Microbial and Food Safety Laboratory, Beltsville Area Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation></author><author><name sortKey="Van Kessel, Jo Ann S" sort="Van Kessel, Jo Ann S" uniqKey="Van Kessel J" first="Jo Ann S." last="Van Kessel">Jo Ann S. Van Kessel</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Environmental Microbial and Food Safety Laboratory, Beltsville Area Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Environmental Microbial and Food Safety Laboratory, Beltsville Area Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27695032</idno><idno type="pmc">5047448</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5047448</idno><idno type="RBID">PMC:5047448</idno><idno type="doi">10.1371/journal.pone.0161225</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000445</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000445</idno><idno type="wicri:Area/Pmc/Curation">000444</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000444</idno><idno type="wicri:Area/Pmc/Checkpoint">000028</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000028</idno><idno type="wicri:Area/Ncbi/Merge">000485</idno><idno type="wicri:Area/Ncbi/Curation">000485</idno><idno type="wicri:Area/Ncbi/Checkpoint">000485</idno><idno type="wicri:Area/Main/Merge">000033</idno><idno type="wicri:Area/Main/Curation">000033</idno><idno type="wicri:Area/Main/Exploration">000033</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genomic and Evolutionary Analysis of Two <italic>Salmonella enterica</italic> Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America</title><author><name sortKey="Haley, Bradd J" sort="Haley, Bradd J" uniqKey="Haley B" first="Bradd J." last="Haley">Bradd J. Haley</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Environmental Microbial and Food Safety Laboratory, Beltsville Area Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Environmental Microbial and Food Safety Laboratory, Beltsville Area Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation></author><author><name sortKey="Kim, Seon Woo" sort="Kim, Seon Woo" uniqKey="Kim S" first="Seon Woo" last="Kim">Seon Woo Kim</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Environmental Microbial and Food Safety Laboratory, Beltsville Area Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Environmental Microbial and Food Safety Laboratory, Beltsville Area Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation></author><author><name sortKey="Pettengill, James" sort="Pettengill, James" uniqKey="Pettengill J" first="James" last="Pettengill">James Pettengill</name><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Office of Analytics and Outreach, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, College Park, MD, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Office of Analytics and Outreach, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, College Park, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation></author><author><name sortKey="Luo, Yan" sort="Luo, Yan" uniqKey="Luo Y" first="Yan" last="Luo">Yan Luo</name><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Office of Analytics and Outreach, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, College Park, MD, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Office of Analytics and Outreach, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, College Park, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation></author><author><name sortKey="Karns, Jeffrey S" sort="Karns, Jeffrey S" uniqKey="Karns J" first="Jeffrey S." last="Karns">Jeffrey S. Karns</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Environmental Microbial and Food Safety Laboratory, Beltsville Area Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Environmental Microbial and Food Safety Laboratory, Beltsville Area Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation></author><author><name sortKey="Van Kessel, Jo Ann S" sort="Van Kessel, Jo Ann S" uniqKey="Van Kessel J" first="Jo Ann S." last="Van Kessel">Jo Ann S. Van Kessel</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Environmental Microbial and Food Safety Laboratory, Beltsville Area Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Environmental Microbial and Food Safety Laboratory, Beltsville Area Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Salmonella enterica</italic> subsp. <italic>enterica</italic> serovar Kentucky is frequently isolated from healthy poultry and dairy cows and is occasionally isolated from people with clinical disease. A genomic analysis of 119 isolates collected in the United States from dairy cows, ground beef, poultry and poultry products, and human clinical cases was conducted. Results of the analysis demonstrated that the majority of poultry and bovine-associated <italic>S</italic>. Kentucky were sequence type (ST) 152. Several bovine-associated (n = 3) and food product isolates (n = 3) collected from the United States and the majority of human clinical isolates were ST198, a sequence type that is frequently isolated from poultry and occasionally from human clinical cases in Northern Africa, Europe and Southeast Asia. A phylogenetic analysis indicated that both STs are more closely related to other <italic>Salmonella</italic> serovars than they are to each other. Additionally, there was strong evidence of an evolutionary divergence between the poultry-associated and bovine-associated ST152 isolates that was due to polymorphisms in four core genome genes. The ST198 isolates recovered from dairy farms in the United States were phylogenetically distinct from those collected from human clinical cases with 66 core genome SNPs differentiating the two groups, but more isolates are needed to determine the significance of this distinction. Identification of <italic>S</italic>. Kentucky ST198 from dairy animals in the United States suggests that the presence of this pathogen should be monitored in food-producing animals.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Foley, Sl" uniqKey="Foley S">SL Foley</name></author><author><name sortKey="Nayak, R" uniqKey="Nayak R">R Nayak</name></author><author><name sortKey="Hanning, Ib" uniqKey="Hanning I">IB Hanning</name></author><author><name sortKey="Johnson, Tj" uniqKey="Johnson T">TJ Johnson</name></author><author><name sortKey="Han, J" uniqKey="Han J">J Han</name></author><author><name sortKey="Ricke, Sc" uniqKey="Ricke S">SC Ricke</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Van Kessel, Js" uniqKey="Van Kessel J">JS Van Kessel</name></author><author><name sortKey="Karns, Js" uniqKey="Karns J">JS Karns</name></author><author><name sortKey="Wolfgang, Dr" uniqKey="Wolfgang D">DR 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Hacker</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>États-Unis</li></country></list><tree><country name="États-Unis"><noRegion><name sortKey="Haley, Bradd J" sort="Haley, Bradd J" uniqKey="Haley B" first="Bradd J." last="Haley">Bradd J. Haley</name></noRegion><name sortKey="Karns, Jeffrey S" sort="Karns, Jeffrey S" uniqKey="Karns J" first="Jeffrey S." last="Karns">Jeffrey S. Karns</name><name sortKey="Kim, Seon Woo" sort="Kim, Seon Woo" uniqKey="Kim S" first="Seon Woo" last="Kim">Seon Woo Kim</name><name sortKey="Luo, Yan" sort="Luo, Yan" uniqKey="Luo Y" first="Yan" last="Luo">Yan Luo</name><name sortKey="Pettengill, James" sort="Pettengill, James" uniqKey="Pettengill J" first="James" last="Pettengill">James Pettengill</name><name sortKey="Van Kessel, Jo Ann S" sort="Van Kessel, Jo Ann S" uniqKey="Van Kessel J" first="Jo Ann S." last="Van Kessel">Jo Ann S. Van Kessel</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:27695032" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a CobaltMaghrebV1
| This area was generated with Dilib version V0.6.32. |  |